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Philippe Lemey

1. •SPREAD is a user-friendly application to analyze and visualize phylogeographic reconstructions resulting from Bayesian inference of spatio-temporal diffusion. The source code of the current stable release is available here: SPREAD_v1.0.6.tgz.
   

2. - Windows version: SPREAD v1.0.6.zip
   

3. - MacOS X SPREAD v1.0.6.dmg.
   

4. An issue emerged for the continuous tree conversion to kml on MacOS  in version 1.0.6. This spread.jar provides a temporary solution: spread.jar
   

5. - GNU Linux/Unix SPREAD_v1.0.6.tgz.
   

6. SPREAD development is hosted on github.
   

7. 
   

8. •A tutorial on SPREAD is available here.
   

1. •Citation: Bielejec F., Rambaut A., Suchard M.A & Lemey P. SPREAD: Spatial Phylogenetic Reconstruction of Evolutionary Dynamics. Bioinformatics, 2011, 27(20):2910-2912. doi:10.1093
   

1. •Example input files:
   

2. ➡H5N1_HA_discrete_MCC.tre
   

3. ➡H5N1_HA_discrete_rateMatrix.log
   

4. ➡locationCoordinates_H5N1.txt
   

5. ➡RacRABV_cont_0.8_MCC_snyder.tre
   

6. ➡RacRABV_cont.trees
   

1. •SPREAD is included in the softpedia software database.
   

SPREAD

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